Package index • Colossus

All functions

CaseControlRun(): Fully runs a case-control regression model, returning the model and results
CoxRun(): Fully runs a cox or fine-gray regression model, returning the model and results
CoxRunMulti(): Fully runs a cox or fine-gray regression model with multiple column realizations, returning the model and results
Date_Shift(): Automates creating a date difference column
EventAssignment(): Generic background/excess event calculation function
EventAssignment(<poisres>): Predicts how many events are due to baseline vs excess for a completed poisson model
EventAssignment(<poisresbound>): Predicts how many events are due to baseline vs excess for a completed poisson likelihood boundary regression
Event_Count_Gen(): uses a table, list of categories, and list of event summaries to generate person-count tables
Event_Time_Gen(): uses a table, list of categories, list of summaries, list of events, and person-year information to generate person-time tables
Joint_Multiple_Events(): Automates creating data for a joint competing risks analysis
LikelihoodBound(): Generic likelihood boundary calculation function
LikelihoodBound(<coxres>): Calculates the likelihood boundary for a completed cox model
LikelihoodBound(<logitres>): Calculates the likelihood boundary for a completed Logistic model
LikelihoodBound(<poisres>): Calculates the likelihood boundary for a completed Poisson model
Likelihood_Ratio_Test(): Defines the likelihood ratio test
Linked_Dose_Formula(): Calculates Full Parameter list for Special Dose Formula
Linked_Lin_Exp_Para(): Calculates The Additional Parameter For a linear-exponential formula with known maximum
LogisticRun(): Fully runs a logistic regression model, returning the model and results
LogisticRunMulti(): Fully runs a logistic regression model with multiple column realizations, returning the model and results
LogisticRunMultiOut(): Fully runs a logistic regression model with multiple event realizations, returning the model and results
OMP_Check(): Checks the OMP flag
PoisRun(): Fully runs a poisson regression model, returning the model and results
PoisRunJoint(): Fully runs a joint poisson regression model, returning the model and results
PoisRunMulti(): Fully runs a poisson regression model with multiple column realizations, returning the model and results
PoisRunMultiOut(): Fully runs a poisson regression model with multiple event realizations, returning the model and results
RelativeRisk(): Generic relative risk calculation function
RelativeRisk(<coxmodel>): Calculates hazard ratios for a reference vector and model
RelativeRisk(<coxres>): Calculates hazard ratios for a reference vector
RelativeRisk(<formula>): Calculates hazard ratios for a reference vector and model
Replace_Missing(): Automatically assigns missing values in listed columns
Residual(): Generic Residual calculation function
Residual(<logitmodel>): Calculates the Residuals for a logistic model
Residual(<logitres>): Calculates the Residuals for a completed logistic model
Residual(<poismodel>): Calculates the Residuals for a poisson formula
Residual(<poisres>): Calculates the Residuals for a completed poisson model
System_Version(): Checks OS, compilers, and OMP
Time_Since(): Automates creating a date since a reference column
factorize(): Splits a parameter into factors
gen_time_dep(): Applies time dependence to parameters
get_form(): Interprets a Colossus formula and makes necessary changes to data
get_form_joint(): Interprets a Poisson joint formula and makes necessary changes to data
plot(<coxres>): Performs Cox Proportional Hazard model plots
plotMartingale(): Generic Martingale Residual Plotting function
plotMartingale(<coxres>): Performs Cox Proportional Hazard model martingale residual plots
plotRisk(): Generic Risk Plotting function
plotRisk(<coxres>): Performs Cox Proportional Hazard model hazard ratio plots
plotSchoenfeld(): Generic Schoenfeld Residual Plotting function
plotSchoenfeld(<coxres>): Performs Cox Proportional Hazard model schoenfeld residual plots
plotSurvival(): Generic Survival Plotting function
plotSurvival(<coxres>): Performs Cox Proportional Hazard model survival plots