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CaseControlRun()
- Fully runs a case-control regression model, returning the model and results
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Check_Iters()
- Automatically checks the number of starting guesses
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ColossusCoxSurv()
- Interprets basic cox survival formula RHS
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ColossusLogitSurv()
- Interprets basic logistic survival formula RHS with no grouping
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ColossusPoisSurv()
- Interprets basic poisson survival formula RHS
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CoxRun()
- Fully runs a cox or fine-gray regression model, returning the model and results
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CoxRunMulti()
- Fully runs a cox or fine-gray regression model with multiple column realizations, returning the model and results
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Date_Shift()
- Automates creating a date difference column
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EventAssignment()
- Generic background/excess event calculation function
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EventAssignment(<default>)
- Predicts how many events are due to baseline vs excess
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EventAssignment(<poisres>)
- Calculates the likelihood boundary for a completed cox model
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Event_Count_Gen()
- uses a table, list of categories, and list of event summaries to generate person-count tables
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Event_Time_Gen()
- uses a table, list of categories, list of summaries, list of events, and person-year information to generate person-time tables
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Joint_Multiple_Events()
- Automates creating data for a joint competing risks analysis
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LikelihoodBound()
- Generic likelihood boundary calculation function
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LikelihoodBound(<coxres>)
- Calculates the likelihood boundary for a completed cox model
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LikelihoodBound(<default>)
- Generic likelihood boundary calculation function, default option
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LikelihoodBound(<poisres>)
- Calculates the likelihood boundary for a completed Poisson model
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Likelihood_Ratio_Test()
- Defines the likelihood ratio test
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Linked_Dose_Formula()
- Calculates Full Parameter list for Special Dose Formula
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Linked_Lin_Exp_Para()
- Calculates The Additional Parameter For a linear-exponential formula with known maximum
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LogisticRun()
- Fully runs a logistic regression model, returning the model and results
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OMP_Check()
- Checks the OMP flag
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PoisRun()
- Fully runs a poisson regression model, returning the model and results
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PoisRunJoint()
- Fully runs a joint poisson regression model, returning the model and results
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PoisRunMulti()
- Fully runs a poisson regression model with multiple column realizations, returning the model and results
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RelativeRisk()
- Generic relative risk calculation function
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RelativeRisk(<coxres>)
- Calculates hazard ratios for a reference vector
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RelativeRisk(<default>)
- Generic relative risk calculation function, default option
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Replace_Missing()
- Automatically assigns missing values in listed columns
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Residual()
- Generic Residual calculation function
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Residual(<default>)
- Generic Residual calculation function, default option
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Residual(<poisres>)
- Calculates the likelihood boundary for a completed cox model
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RunCaseControlRegression_Omnibus()
- Performs Matched Case-Control Conditional Logistic Regression
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RunCoxRegression_Omnibus()
- Performs Cox Proportional Hazards regression using the omnibus function
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RunLogisticRegression_Omnibus()
- Performs basic Logistic regression using the omnibus function
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RunPoissonRegression_Omnibus()
- Performs basic Poisson regression using the omnibus function
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System_Version()
- Checks OS, compilers, and OMP
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Time_Since()
- Automates creating a date since a reference column
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apply_norm()
- Automatically applies a normalization to either an input or output
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factorize()
- Splits a parameter into factors
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gen_time_dep()
- Applies time dependence to parameters
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get_form()
- Interprets a Colossus formula and makes necessary changes to data
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get_form_joint()
- Interprets a Poisson joint formula and makes necessary changes to data
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plot(<coxres>)
- Performs Cox Proportional Hazard model plots
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print(<caseconres>)
- Prints a case-control regression output clearly
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print(<coxres>)
- Prints a cox regression output clearly
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print(<coxresbound>)
- Prints a cox likelihood boundary regression output clearly
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print(<logitres>)
- Prints a logistic regression output clearly
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print(<poisres>)
- Prints a poisson regression output clearly
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print(<poisresbound>)
- Prints a poisson likelihood boundary regression output clearly