Package index
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Check_Dupe_Columns()
- checks for duplicated column names
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Check_Trunc()
- Applies time duration truncation limits to create columns for Cox model
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Check_Verbose()
- General purpose verbosity check
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Correct_Formula_Order()
- Corrects the order of terms/formula/etc
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Cox_Relative_Risk()
- Calculates hazard ratios for a reference vector
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Date_Shift()
- Automates creating a date difference column
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Def_Control()
- Automatically assigns missing control values
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Def_Control_Guess()
- Automatically assigns missing guessing control values
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Def_model_control()
- Automatically assigns missing model control values
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Def_modelform_fix()
- Automatically assigns geometric-mixture values and checks that a valid modelform is used
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Gather_Guesses_CPP()
- Performs checks to gather a list of guesses and iterations
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GetCensWeight()
- Calculates and returns data for time by hazard and survival to estimate censoring rate
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Joint_Multiple_Events()
- Automates creating data for a joint competing risks analysis
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Likelihood_Ratio_Test()
- Defines the likelihood ratio test
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Linked_Dose_Formula()
- Calculates Full Parameter list for Special Dose Formula
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Linked_Lin_Exp_Para()
- Calculates The Additional Parameter For a linear-exponential formula with known maximum
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OMP_Check()
- Checks the OMP flag
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Rcomp_version()
- Checks how R was compiled
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Rcpp_version()
- Checks default R c++ compiler
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Replace_Missing()
- Automatically assigns missing values in listed columns
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RunCoxNull()
- Performs basic Cox Proportional Hazards regression with the null model
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RunCoxPlots()
- Performs Cox Proportional Hazard model plots
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RunCoxRegression()
- Performs basic Cox Proportional Hazards regression without special options
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RunCoxRegression_Basic()
- Performs basic Cox Proportional Hazards regression with a multiplicative log-linear model
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RunCoxRegression_CR()
- Performs basic Cox Proportional Hazards regression with competing risks
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RunCoxRegression_Guesses_CPP()
- Performs basic Cox Proportional Hazards regression, Generates multiple starting guesses on c++ side
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RunCoxRegression_Omnibus()
- Performs Cox Proportional Hazards regression using the omnibus function
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RunCoxRegression_Omnibus_Multidose()
- Performs Cox Proportional Hazards regression using the omnibus function with multiple column realizations
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RunCoxRegression_STRATA()
- Performs basic Cox Proportional Hazards regression with strata effect
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RunCoxRegression_Single()
- Performs basic Cox Proportional Hazards calculation with no derivative
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RunCoxRegression_Tier_Guesses()
- Performs basic cox regression, with multiple guesses, starts with solving for a single term
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RunPoissonEventAssignment()
- Predicts how many events are due to baseline vs excess
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RunPoissonEventAssignment_bound()
- Predicts how many events are due to baseline vs excess at the confidence bounds of a single parameter
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RunPoissonRegression()
- Performs basic poisson regression
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RunPoissonRegression_Guesses_CPP()
- Performs basic Poisson regression, generates multiple starting guesses on c++ side
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RunPoissonRegression_Joint_Omnibus()
- Performs joint Poisson regression using the omnibus function
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RunPoissonRegression_Omnibus()
- Performs basic Poisson regression using the omnibus function
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RunPoissonRegression_Residual()
- Calculates poisson residuals
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RunPoissonRegression_STRATA()
- Performs poisson regression with strata effect
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RunPoissonRegression_Single()
- Performs poisson regression with no derivative calculations
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RunPoissonRegression_Tier_Guesses()
- Performs basic poisson regression, with multiple guesses, starts with a single term
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System_Version()
- Checks OS, compilers, and OMP
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Time_Since()
- Automates creating a date since a reference column
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factorize()
- Splits a parameter into factors
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factorize_par()
- Splits a parameter into factors in parallel
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gcc_version()
- Checks default c++ compiler
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gen_time_dep()
- Applies time dependence to parameters
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get_os()
- Checks system OS
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interact_them()
- Defines Interactions