Skip to contents

All functions

CaseControlRun()
Fully runs a case-control regression model, returning the model and results
Check_Iters()
Automatically checks the number of starting guesses
ColossusCoxSurv()
Interprets basic cox survival formula RHS
ColossusLogitSurv()
Interprets basic logistic survival formula RHS with no grouping
ColossusPoisSurv()
Interprets basic poisson survival formula RHS
CoxRun()
Fully runs a cox or fine-gray regression model, returning the model and results
CoxRunMulti()
Fully runs a cox or fine-gray regression model with multiple column realizations, returning the model and results
Date_Shift()
Automates creating a date difference column
EventAssignment()
Generic background/excess event calculation function
EventAssignment(<default>)
Predicts how many events are due to baseline vs excess
EventAssignment(<poisres>)
Calculates the likelihood boundary for a completed cox model
Event_Count_Gen()
uses a table, list of categories, and list of event summaries to generate person-count tables
Event_Time_Gen()
uses a table, list of categories, list of summaries, list of events, and person-year information to generate person-time tables
Joint_Multiple_Events()
Automates creating data for a joint competing risks analysis
LikelihoodBound()
Generic likelihood boundary calculation function
LikelihoodBound(<coxres>)
Calculates the likelihood boundary for a completed cox model
LikelihoodBound(<default>)
Generic likelihood boundary calculation function, default option
LikelihoodBound(<poisres>)
Calculates the likelihood boundary for a completed Poisson model
Likelihood_Ratio_Test()
Defines the likelihood ratio test
Linked_Dose_Formula()
Calculates Full Parameter list for Special Dose Formula
Linked_Lin_Exp_Para()
Calculates The Additional Parameter For a linear-exponential formula with known maximum
LogisticRun()
Fully runs a logistic regression model, returning the model and results
OMP_Check()
Checks the OMP flag
PoisRun()
Fully runs a poisson regression model, returning the model and results
PoisRunJoint()
Fully runs a joint poisson regression model, returning the model and results
PoisRunMulti()
Fully runs a poisson regression model with multiple column realizations, returning the model and results
RelativeRisk()
Generic relative risk calculation function
RelativeRisk(<coxres>)
Calculates hazard ratios for a reference vector
RelativeRisk(<default>)
Generic relative risk calculation function, default option
Replace_Missing()
Automatically assigns missing values in listed columns
Residual()
Generic Residual calculation function
Residual(<default>)
Generic Residual calculation function, default option
Residual(<poisres>)
Calculates the likelihood boundary for a completed cox model
RunCaseControlRegression_Omnibus()
Performs Matched Case-Control Conditional Logistic Regression
RunCoxRegression_Omnibus()
Performs Cox Proportional Hazards regression using the omnibus function
RunLogisticRegression_Omnibus()
Performs basic Logistic regression using the omnibus function
RunPoissonRegression_Omnibus()
Performs basic Poisson regression using the omnibus function
System_Version()
Checks OS, compilers, and OMP
Time_Since()
Automates creating a date since a reference column
apply_norm()
Automatically applies a normalization to either an input or output
factorize()
Splits a parameter into factors
gen_time_dep()
Applies time dependence to parameters
get_form()
Interprets a Colossus formula and makes necessary changes to data
get_form_joint()
Interprets a Poisson joint formula and makes necessary changes to data
plot(<coxres>)
Performs Cox Proportional Hazard model plots
print(<caseconres>)
Prints a case-control regression output clearly
print(<coxres>)
Prints a cox regression output clearly
print(<coxresbound>)
Prints a cox likelihood boundary regression output clearly
print(<logitres>)
Prints a logistic regression output clearly
print(<poisres>)
Prints a poisson regression output clearly
print(<poisresbound>)
Prints a poisson likelihood boundary regression output clearly