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Colossus 0.9

  • Added a NEWS.md file to track changes to the package.

Colossus 1.0.0

CRAN release: 2024-02-20

  • Initial submission
  • C++ code modified to not apply OpenMP code if OpenMP isn’t detected, to resolve MacOS installation failures

Colossus 1.0.1

CRAN release: 2024-02-26

  • Configuration improved to detect compiler information
  • Linux configuration depends on the system wide c++ default and the compiler used to compile R
  • OpenMP support is not used if the c++ default or the R compiler is clang

Colossus 1.0.2

  • utility checks updated to check that keep_constant is 0/1 values
  • code will fail if keep_constant is not integer valued and 0/1, with explanation of why

Colossus 1.0.3

  • configuration script libraries moved from Suggested: to Imports:
  • configuration script functions moved to non-exported functions in Colossus, circumvents note about imported libraries not being used and may be later used to provide the user with a function that informs them of why OpenMP is/isn’t supported

Colossus 1.0.4

  • utility checks updated to check term numbers and subterm types in R side
  • code will fail if term numbers are not integers, term numbers are missing, or subterm types are

Colossus 1.0.5

  • compilation flags changed to macros

Colossus 1.1.0

CRAN release: 2024-04-03

  • Default Makevars is now fully portable
  • By default only windows uses OpenMP now
  • The GitHub version will include instructions on activating configuration to use OpenMP on gcc Linux

Colossus 1.1.1

CRAN release: 2024-04-30

  • ggplot2 no longer required, now optional
  • additional testing added for coverage
  • default Makevars added via bash script

Colossus 1.1.2

  • Log-likelihood bound functionality added
  • subject to usual convergence issues, manual search option

Colossus 1.1.3

CRAN release: 2024-09-06

  • Cox regression now removes rows that end before first event and start after last event
  • Cox regression now sets constant rows to be constant, helps with aliasing
  • Tests now use sink() to avoid printing as much excessive output to console. Tests now consolidated further.

Colossus 1.1.4.1

CRAN release: 2024-09-20

  • Cox plotting functions now return the tables used for plots (only last plot table returned)
  • Plotting vignette updated to include more details and plots
  • survival package listed as suggested for plotting vignette

Colossus 1.1.4.2

  • R errors and warnings sent to stop() and warning(). C++ errors and warnings still controlled by verbosity argument
  • ggsave defaults to width/height = 7
  • Updates started to fix possible OpenMP issues with fedora 36 running clang 18
  • Unable to have debug printing as an option and cover the c++ files with testing, but still have test output be readable. debug output removed.