Changelog
Source:NEWS.md
Colossus 1.0.0
CRAN release: 2024-02-20
- Initial submission
- C++ code modified to not apply OpenMP code if OpenMP isn’t detected, to resolve MacOS installation failures
Colossus 1.0.1
CRAN release: 2024-02-26
- Configuration improved to detect compiler information
- Linux configuration depends on the system wide c++ default and the compiler used to compile R
- OpenMP support is not used if the c++ default or the R compiler is clang
Colossus 1.0.2
- utility checks updated to check that keep_constant is 0/1 values
- code will fail if keep_constant is not integer valued and 0/1, with explanation of why
Colossus 1.0.3
- configuration script libraries moved from Suggested: to Imports:
- configuration script functions moved to non-exported functions in Colossus, circumvents note about imported libraries not being used and may be later used to provide the user with a function that informs them of why OpenMP is/isn’t supported
Colossus 1.0.4
- utility checks updated to check term numbers and subterm types in R side
- code will fail if term numbers are not integers, term numbers are missing, or subterm types are
Colossus 1.1.0
CRAN release: 2024-04-03
- Default Makevars is now fully portable
- By default only windows uses OpenMP now
- The GitHub version will include instructions on activating configuration to use OpenMP on gcc Linux
Colossus 1.1.1
CRAN release: 2024-04-30
- ggplot2 no longer required, now optional
- additional testing added for coverage
- default Makevars added via bash script
Colossus 1.1.2
- Log-likelihood bound functionality added
- subject to usual convergence issues, manual search option
Colossus 1.1.3
CRAN release: 2024-09-06
- Cox regression now removes rows that end before first event and start after last event
- Cox regression now sets constant rows to be constant, helps with aliasing
- Tests now use sink() to avoid printing as much excessive output to console. Tests now consolidated further.
Colossus 1.1.4.1
CRAN release: 2024-09-20
- Cox plotting functions now return the tables used for plots (only last plot table returned)
- Plotting vignette updated to include more details and plots
- survival package listed as suggested for plotting vignette
Colossus 1.1.4.2
CRAN release: 2024-10-21
- R errors and warnings sent to stop() and warning(). C++ errors and warnings still controlled by verbosity argument
- ggsave defaults to width/height = 7
- Updates started to fix possible OpenMP issues with fedora 36 running clang 18
- Unable to have debug printing as an option and cover the c++ files with testing, but still have test output be readable. debug output removed.